Bio. DBC包
子包
子模块
- Bio. DBC. AbstractProperty Map模块
- Bio. DBC.Atom模块
AtomAtom.__init__()Atom.__eq__()Atom.__ne__()Atom.__gt__()Atom.__ge__()Atom.__lt__()Atom.__le__()Atom.__hash__()Atom.__repr__()Atom.__sub__()Atom.strictly_equals()Atom.set_serial_number()Atom.set_bfactor()Atom.set_coord()Atom.set_altloc()Atom.set_occupancy()Atom.set_sigatm()Atom.set_siguij()Atom.set_anisou()Atom.set_charge()Atom.set_radius()Atom.flag_disorder()Atom.is_disordered()Atom.set_parent()Atom.detach_parent()Atom.get_sigatm()Atom.get_siguij()Atom.get_anisou()Atom.get_parent()Atom.get_serial_number()Atom.get_name()Atom.get_id()Atom.get_full_id()Atom.get_coord()Atom.get_bfactor()Atom.get_occupancy()Atom.get_fullname()Atom.get_altloc()Atom.get_level()Atom.get_charge()Atom.get_radius()Atom.transform()Atom.get_vector()Atom.copy()Atom.__firstlineno__Atom.__static_attributes__
DisorderedAtomDisorderedAtom.__init__()DisorderedAtom.__iter__()DisorderedAtom.__repr__()DisorderedAtom.center_of_mass()DisorderedAtom.disordered_get_list()DisorderedAtom.disordered_add()DisorderedAtom.disordered_remove()DisorderedAtom.transform()DisorderedAtom.__firstlineno__DisorderedAtom.__static_attributes__
- 生物PDB链模块
ChainChain.__init__()Chain.__gt__()Chain.__ge__()Chain.__lt__()Chain.__le__()Chain.__getitem__()Chain.__contains__()Chain.__delitem__()Chain.__repr__()Chain.get_unpacked_list()Chain.has_id()Chain.get_residues()Chain.get_atoms()Chain.atom_to_internal_coordinates()Chain.internal_to_atom_coordinates()Chain.__annotations__Chain.__firstlineno__Chain.__orig_bases__Chain.__parameters__Chain.__static_attributes__
- Bio. DBC.dsSP模块
- Bio. DBC.Dice模块
- Bio. DBC.实体模块
EntityEntity.levelEntity.__init__()Entity.parentEntity.child_listEntity.child_dictEntity.__len__()Entity.__getitem__()Entity.__delitem__()Entity.__contains__()Entity.__iter__()Entity.__eq__()Entity.__ne__()Entity.__gt__()Entity.__ge__()Entity.__lt__()Entity.__le__()Entity.__hash__()Entity.idEntity.strictly_equals()Entity.get_level()Entity.set_parent()Entity.detach_parent()Entity.detach_child()Entity.add()Entity.insert()Entity.get_iterator()Entity.get_list()Entity.has_id()Entity.get_parent()Entity.get_id()Entity.get_full_id()Entity.transform()Entity.center_of_mass()Entity.copy()Entity.__annotations__Entity.__firstlineno__Entity.__orig_bases__Entity.__parameters__Entity.__static_attributes__
DisorderedEntityWrapperDisorderedEntityWrapper.__init__()DisorderedEntityWrapper.__getattr__()DisorderedEntityWrapper.__getitem__()DisorderedEntityWrapper.__setitem__()DisorderedEntityWrapper.__contains__()DisorderedEntityWrapper.__iter__()DisorderedEntityWrapper.__len__()DisorderedEntityWrapper.__sub__()DisorderedEntityWrapper.__gt__()DisorderedEntityWrapper.__ge__()DisorderedEntityWrapper.__lt__()DisorderedEntityWrapper.__le__()DisorderedEntityWrapper.copy()DisorderedEntityWrapper.get_id()DisorderedEntityWrapper.strictly_equals()DisorderedEntityWrapper.disordered_has_id()DisorderedEntityWrapper.detach_parent()DisorderedEntityWrapper.get_parent()DisorderedEntityWrapper.set_parent()DisorderedEntityWrapper.disordered_select()DisorderedEntityWrapper.disordered_add()DisorderedEntityWrapper.disordered_remove()DisorderedEntityWrapper.__annotations__DisorderedEntityWrapper.__firstlineno__DisorderedEntityWrapper.__static_attributes__DisorderedEntityWrapper.is_disordered()DisorderedEntityWrapper.disordered_get_id_list()DisorderedEntityWrapper.disordered_get()DisorderedEntityWrapper.disordered_get_list()
- Bio. DBC.FragmentMapper模块
- Bio. DBC. HS Exposure模块
- Bio.PDB.MMCIF2Dict模块
- Bio. DBC.MMCIFParser模块
- Bio. DBC.模型模块
- Bio. DBC. NASYS模块
- Bio. DBC.NeighborSearch模块
- Bio. DBC. PDBSYS模块
- Bio. DBC. PDBOP模块
- Bio. PDB.PDBList模块
PDBListPDBList.PDB_REFPDBList.__init__()PDBList.get_status_list()PDBList.get_recent_changes()PDBList.get_all_entries()PDBList.get_all_obsolete()PDBList.retrieve_pdb_file()PDBList.update_pdb()PDBList.download_pdb_files()PDBList.get_all_assemblies()PDBList.retrieve_assembly_file()PDBList.download_all_assemblies()PDBList.download_entire_pdb()PDBList.download_obsolete_entries()PDBList.get_seqres_file()PDBList.__firstlineno__PDBList.__static_attributes__
- Bio. DBC.PDBMLParser模块
- Bio. DBC.PDBParser模块
- Bio. DBC.PICIO模块
- Bio. DBC.PSEA模块
- 生物.PDB.多肽模块
- Bio. DBC.残留物模块
ResidueResidue.__init__()Residue.__repr__()Residue.strictly_equals()Residue.add()Residue.flag_disordered()Residue.is_disordered()Residue.get_resname()Residue.get_unpacked_list()Residue.get_segid()Residue.get_atoms()Residue.__annotations__Residue.__firstlineno__Residue.__orig_bases__Residue.__parameters__Residue.__static_attributes__
DisorderedResidue
- Bio. PDB.ResidueDepth模块
- Bio. DBC.SASA模块
- Bio. DBC.SCADIO模块
- Bio. DBC.选择模块
- Bio. DBC.结构模块
StructureStructure.__init__()Structure.__repr__()Structure.get_models()Structure.get_chains()Structure.get_residues()Structure.get_atoms()Structure.atom_to_internal_coordinates()Structure.internal_to_atom_coordinates()Structure.__annotations__Structure.__firstlineno__Structure.__orig_bases__Structure.__parameters__Structure.__static_attributes__
- Bio. DBC. StructureAlliance模块
- Bio. DBC.StructureBuilder模块
StructureBuilderStructureBuilder.__init__()StructureBuilder.set_header()StructureBuilder.set_line_counter()StructureBuilder.init_structure()StructureBuilder.init_model()StructureBuilder.init_chain()StructureBuilder.init_seg()StructureBuilder.init_residue()StructureBuilder.init_atom()StructureBuilder.set_anisou()StructureBuilder.set_siguij()StructureBuilder.set_sigatm()StructureBuilder.get_structure()StructureBuilder.set_symmetry()StructureBuilder.__firstlineno__StructureBuilder.__static_attributes__
- Bio. DBC.叠加模块
- Bio. DBC.alphafold_DB模块
- Bio. DBC.二进制_cif模块
- Bio. DBC.cealign模块
- Bio. PDB.ic_数据模块
- Bio. PDB.ic_重建模块
- Bio. DBC.内部_coords模块
IC_ChainIC_Chain.MaxPeptideBondIC_Chain.ParallelAssembleResiduesIC_Chain.AAsizIC_Chain.atomArrayIC_Chain.dCoordSpaceIC_Chain.dcsValidIC_Chain.__init__()IC_Chain.__deepcopy__()IC_Chain.clear_ic()IC_Chain.build_atomArray()IC_Chain.build_edraArrays()IC_Chain.assemble_residues()IC_Chain.assemble_residues_ser()IC_Chain.init_edra()IC_Chain.init_atom_coords()IC_Chain.update_dCoordSpace()IC_Chain.propagate_changes()IC_Chain.internal_to_atom_coordinates()IC_Chain.atom_to_internal_coordinates()IC_Chain.distance_plot()IC_Chain.dihedral_signs()IC_Chain.distplot_to_dh_arrays()IC_Chain.distance_to_internal_coordinates()IC_Chain.copy_initNCaCs()IC_Chain.make_extended()IC_Chain.__annotations__IC_Chain.__firstlineno__IC_Chain.__static_attributes__
IC_ResidueIC_Residue.accept_resnamesIC_Residue.no_altlocIC_Residue.gly_CbetaIC_Residue.pic_accuracyIC_Residue.accept_backboneIC_Residue.accept_sidechainIC_Residue.accept_mainchainIC_Residue.accept_hydrogensIC_Residue.accept_deuteriumsIC_Residue.accept_atomsIC_Residue.__init__()IC_Residue.__deepcopy__()IC_Residue.__contains__()IC_Residue.rak()IC_Residue.__repr__()IC_Residue.pretty_str()IC_Residue.set_flexible()IC_Residue.set_hbond()IC_Residue.clear_transforms()IC_Residue.assemble()IC_Residue.split_akl()IC_Residue.atom_sernumIC_Residue.atom_chainIC_Residue.pdb_residue_string()IC_Residue.pic_flagsIC_Residue.picFlagsDefaultIC_Residue.picFlagsDictIC_Residue.pick_angle()IC_Residue.get_angle()IC_Residue.set_angle()IC_Residue.bond_rotate()IC_Residue.bond_set()IC_Residue.pick_length()IC_Residue.get_length()IC_Residue.set_length()IC_Residue.applyMtx()IC_Residue.__annotations__IC_Residue.__firstlineno__IC_Residue.__static_attributes__
EdronEdron.edron_reEdron.gen_key()Edron.gen_tuple()Edron.__init__()Edron.__deepcopy__()Edron.__contains__()Edron.is_backbone()Edron.__repr__()Edron.__hash__()Edron.__eq__()Edron.__ne__()Edron.__gt__()Edron.__ge__()Edron.__lt__()Edron.__le__()Edron.__firstlineno__Edron.__static_attributes__
HedronDihedronAtomKeyAtomKey.atom_reAtomKey.fieldNamesAtomKey.fieldsAtomKey.d2hAtomKey.__init__()AtomKey.__firstlineno__AtomKey.__static_attributes__AtomKey.__deepcopy__()AtomKey.__repr__()AtomKey.__hash__()AtomKey.altloc_match()AtomKey.is_backbone()AtomKey.atm()AtomKey.cr_class()AtomKey.__ne__()AtomKey.__eq__()AtomKey.__gt__()AtomKey.__ge__()AtomKey.__lt__()AtomKey.__le__()
set_accuracy_95()HedronMatchErrorMissingAtomError
- Bio. DBC.mmcifio模块
- Bio. DBC.parse_pdb_标头模块
- Bio. DBC.qcprot模块
qcp()QCPSuperimposerQCPSuperimposer.__init__()QCPSuperimposer.set_atoms()QCPSuperimposer.apply()QCPSuperimposer.set()QCPSuperimposer.run()QCPSuperimposer.get_transformed()QCPSuperimposer.get_rotran()QCPSuperimposer.get_init_rms()QCPSuperimposer.get_rms()QCPSuperimposer.__firstlineno__QCPSuperimposer.__static_attributes__
- Bio. DBC. vector模块
m2rotaxis()vector_to_axis()rotaxis2m()rotaxis()refmat()rotmat()calc_angle()calc_dihedral()VectorVector.__init__()Vector.__repr__()Vector.__neg__()Vector.__add__()Vector.__sub__()Vector.__mul__()Vector.__truediv__()Vector.__pow__()Vector.__getitem__()Vector.__setitem__()Vector.__contains__()Vector.norm()Vector.normsq()Vector.normalize()Vector.normalized()Vector.angle()Vector.get_array()Vector.left_multiply()Vector.right_multiply()Vector.copy()Vector.__firstlineno__Vector.__static_attributes__
homog_rot_mtx()set_Z_homog_rot_mtx()set_Y_homog_rot_mtx()set_X_homog_rot_mtx()homog_trans_mtx()set_homog_trans_mtx()homog_scale_mtx()get_spherical_coordinates()coord_space()multi_rot_Z()multi_rot_Y()multi_coord_space()
模块内容
处理大分子晶体结构的课程。
包括：DBC和mminf解析器、结构类、用于保持DBC本地副本最新的模块、DBC文件的选择性IO等。
原作者：托马斯·哈默里克。撰稿人：- Peter Cock - Joe Greener - Rob Miller - Lenna X。彼得森-若昂·罗德里格斯-克里斯蒂安·罗瑟-埃里克·塔列维奇-以及许多其他人。